PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001826.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 366aa    MW: 39789.7 Da    PI: 8.5909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001826.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75e-09189236455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Itr_sc001826.1_g00002.1 189 SHSLAERARREKISKKMKCLQDLVPGC----NKVVGKAGMLDEIINYVQSLQ 236
                              8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-16183254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-7183240No hitNo description
Gene3DG3DSA:4.10.280.108.8E-18185254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.104185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6189236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-10191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MLRCAQSSPE NNNVSYSVAD LSVLERQRAI FQRLYHPIIH DNHLAGAGAP APENPFPALL  60
DGNLTNFASL WHAEENSPNA AVVDVHGRET GKLSRSSSSI TAAAVPTSSK ANGTATSTRK  120
RKAEEDKKWE GETGDVQSEI TVKCERETSG SSASKENKKS SGSGSGSGDD VQKSNYIHVR  180
ARRGQATDSH SLAERARREK ISKKMKCLQD LVPGCNKVVG KAGMLDEIIN YVQSLQKQVE  240
FLSMKLAALN PRLEFNMDNL FPKELPAYMG SFPAAAMPLE AVNAAFLHYN PLQQLATATS  300
RGGSATMETD MPRSDVVQQM LPHHQRKENN PSESIPELYL DSSYFPVSSG TLRPTLLLPA  360
AARLGK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099632.14e-76PREDICTED: transcription factor BEE 2
TrEMBLA0A068U3181e-83A0A068U318_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000400214e-66(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-55cryptochrome-interacting basic-helix-loop-helix 1